So you are deploying Management Reporter Data mart and get the change tracking error.
Now this would result in you having to set each table noted to have change tracking enabled.
Instead of doing this you can -
Go straight to GP,
Admin -> Setup-> Company-> Company, click the Options button, turn off Enable GL Reporting and Turn it back on. This will reset the change tracking and you can proceed.
Some tables your error would note:
GL00100
GL00102
GL00200
GL00201
GL10000
GL10001
GL10100
GL10101
GL12000
GL12001
GL20000
GL30000
GL32000
GL40000
GL40200
MC00200
MC40000
MC40600
SY00300
SY40100
SY40101